Now showing items 1-3 of 3
ChIA-PET2: A Versatile and Flexible Pipeline for ChIA-PET Data Analysis
(Oxford University Press, 2016-09-12)
ChIA-PET2 is a versatile and flexible pipeline for analyzing different types of ChIA-PET data from raw sequencing reads to chromatin loops. ChIA-PET2 integrates all steps required for ChIA-PET data analysis, including ...
FIND: DifFerential Chromatin INteractions Detection Using a Spatial Poisson Process
Polymer-based simulations and experimental studies indicate the existence of a spatial dependency between the adjacent DNA fibers involved in the formation of chromatin loops. However, the existing strategies for detecting ...
Integrating Hi-C and FISH Data for Modeling of the 3D Organization of Chromosomes
(Nature Publishing Group, 2019-05-03)
The new advances in various experimental techniques that provide complementary information about the spatial conformations of chromosomes have inspired researchers to develop computational methods to fully exploit the ...