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    OLego: Fast and Sensitive Mapping of Spliced mRNA-Seq Reads Using Small Seeds 

    Wu, Jie; Anczuk©w, Olga; Krainer, Adrian R.; Zhang, Michael Q.; Zhang, Chaolin (Oxford University Press, 2013-04)
    A crucial step in analyzing mRNA-Seq data is to accurately and efficiently map hundreds of millions of reads to the reference genome and exon junctions. Here we present OLego, an algorithm specifically designed for de novo ...
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    ModuleRole: A Tool for Modulization, Role Determination and Visualization in Protein-Protein Interaction Networks 

    Li, GuiPeng; Li, Ming; Zhang, YiWei; Wang, Dong; Li, Rong; Guimera, Roger; Gao, Juntao Tony; Zhang, Michael Q. (Public Library of Science, 2014-05-01)
    Rapidly increasing amounts of (physical and genetic) protein-protein interaction (PPI) data are produced by various high-throughput techniques, and interpretation of these data remains a major challenge. In order to gain ...
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    Nucleosome Eviction and Multiple Co-Factor Binding Predict Estrogen-Receptor-Alpha-Asociated Long-Range Interactions 

    He, C.; Wang, X.; Zhang, Michael Q. (Oxford University Press, 2014-04-29)
    Many enhancers regulate their target genes via long-distance interactions. High-throughput experiments like ChIA-PET have been developed to map such largely cell-type-specific interactions between cis-regulatory elements ...
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    FastDMA: An Infinium Humanmethylation450 Beadchip Analyzer 

    Wu, D.; Gu, J.; Zhang, Michael Q. (2013-09-05)
    DNA methylation is vital for many essential biological processes and human diseases. Illumina Infinium HumanMethylation450 Beadchip is a recently developed platform studying genome-wide DNA methylation state on more than ...
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    Miror: A Method for Cell-Type Specific MicroRNA Occupancy Rate Prediction 

    Xie, Peng; Liu, Yu; Li, Yanda; Zhang, Michael Q.; Wang, Xiaowo (Royal Soc Chemistry, 2014-03-13)
    MicroRNA (miRNA) regulation is highly cell-type specific. It is sensitive to both the miRNA-mRNA relative abundance and the competitive endogenous RNA (ceRNA) effect. However, almost all existing miRNA target prediction ...
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    Integrated Omics Study Delineates the Dynamics of Lipid Droplets in Rhodococcus Opacus PD630 

    Chen, Yong; Ding, Yunfeng; Yang, Li; Yu, Jinhai; Liu, Guiming; Wang, Xumin; Zhang, Shuyan; Zhang, Michael Q.; Li, Yanda (Oxford University Press, 2013-10-22)
    Rhodococcus opacus strain PD630 (R. opacus PD630), is an oleaginous bacterium, and also is one of few prokaryotic organisms that contain lipid droplets (LDs). LD is an important organelle for lipid storage but also ...

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    Author
    Zhang, Michael Q. (6)
    Li, Yanda (2)Anczuk©w, Olga (1)Chen, Yong (1)Ding, Yunfeng (1)Gao, Juntao Tony (1)Gu, J. (1)Guimera, Roger (1)He, C. (1)Krainer, Adrian R. (1)... View MoreSubject5-CMLD protein, Rhodococcus opacus PD630 (1)Binding sites (Biochemistry) (1)Breast--Cancer (1)Cancer--Research (1)Cell Polarity (1)Chlamydomonas reinhardtii (1)Chromatin Interaction Analysis by Paired-End Tag Sequencing (ChIA-PET) (1)Deoxyribonucleases (1)DNA--Methylation (1)Endoplasmic reticulum (1)... View MoreDate Issued2013 (3)2014 (3)Has File(s)Yes (6)

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