Web3DMol: Interactive Protein Structure Visualization Based on WebGL

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dc.contributor.authorShi, M.en_US
dc.contributor.authorGao, J.en_US
dc.contributor.authorZhang, Michael Q.en_US
dc.contributor.utdAuthorZhang, Michael Q.en_US
dc.date.accessioned2018-09-24T15:31:30Z
dc.date.available2018-09-24T15:31:30Z
dc.date.created2017-05-08
dc.date.issued2017-05-08en_US
dc.descriptionIncludes supplementary materialen_US
dc.description.abstractA growing number of web-based databases and tools for protein research are being developed. There is now a widespread need for visualization tools to present the three-dimensional (3D) structure of proteins in web browsers. Here, we introduce our 3D modeling program--Web3DMol--a web application focusing on protein structure visualization in modern web browsers. Users submit a PDB identification code or select a PDB archive from their local disk, and Web3DMol will display and allow interactive manipulation of the 3D structure. Featured functions, such as sequence plot, fragment segmentation, measure tool and meta-information display, are offered for users to gain a better understanding of protein structure. Easy-to-use APIs are available for developers to reuse and extend Web3DMol. Web3DMol can be freely accessed at http://web3dmol.duapp.com/, and the source code is distributed under the MIT license.en_US
dc.description.departmentSchool of Natural Sciences and Mathematicsen_US
dc.description.departmentCenter for Systems Biologyen_US
dc.description.sponsorshipState Key Research Development Program of China [2016YFC1200303]; National Natural Science Foundation of China [31361163004, 31671383].en_US
dc.identifier.bibliographicCitationShi, M., J. Gao, and M. Q. Zhang. 2017. "Web3DMol: Interactive protein structure visualization based on WebGL." Nucleic Acids Research 45: 523-W527.en_US
dc.identifier.issn0305-1048en_US
dc.identifier.issueW1en_US
dc.identifier.urihttp://hdl.handle.net/10735.1/6114
dc.identifier.volume45en_US
dc.language.isoenen_US
dc.publisherOxford University Pressen_US
dc.relation.urihttp://dx.doi.org/10.1093/nar/gkx383
dc.rightsCC BY-NC 4.0/ (Attribution-NonCommercial)en_US
dc.rights©2017 The Authorsen_US
dc.rights.urihttp://creativecommons.org/licenses/by-nc/4.0/en_US
dc.sourceNucleic Acids Research
dc.subjectAmino acid sequenceen_US
dc.subjectComparative studiesen_US
dc.subjectInformation processing systemsen_US
dc.subjectProtein-protein interactionsen_US
dc.subjectProteins--Structureen_US
dc.subjectBrowsers (Computer programs)en_US
dc.titleWeb3DMol: Interactive Protein Structure Visualization Based on WebGLen_US
dc.type.genrearticleen_US

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