Synthetic Mammalian Transgene Negative Autoregulation

Date
2013-06-04
item.page.orcid
Journal Title
Journal ISSN
Volume Title
Publisher
item.page.doi
Abstract

Biological networks contain overrepresented small-scale topologies, typically called motifs. A frequently appearing motif is the transcriptional negative-feedback loop, where a gene product represses its own transcription. Here, using synthetic circuits stably integrated in human kidney cells, we study the effect of negative-feedback regulation on cell-wide (extrinsic) and gene-specific (intrinsic) sources of uncertainty. We develop a theoretical approach to extract the two noise components from experiments and show that negative feedback results in significant total noise reduction by reducing extrinsic noise while marginally increasing intrinsic noise. We compare the results to simple negative regulation, where a constitutively transcribed transcription factor represses a reporter protein. We observe that the control architecture also reduces the extrinsic noise but results in substantially higher intrinsic fluctuations. We conclude that negative feedback is the most efficient way to mitigate the effects of extrinsic fluctuations by a sole regulatory wiring.;

Description
Keywords
Synthetic biology, Transgenes, Noise, Proteins
item.page.sponsorship
NIH grant 1R15GM096271; Texas Analog Center of Excellence (TxACE) grant P1209; NSF award CBET-110552
item.page.rights
CC BY 3.0 (Attribution), ©2013 EMBO and Macmillan Publishers Limited
Citation
Shimoga, Vinay, Jacob T. White, Yi Li, Eduardo Sontag, et al. 2013. "Synthetic mammalian transgene negative autoregulation." 9(670): 1-7.